In-depth characterization of denitrifier communities across different soil ecosystems in the tundra
dc.contributor.author | Pessi, Igor S. | |
dc.contributor.author | Viitamäki, Sirja | |
dc.contributor.author | Virkkala, Anna-Maria | |
dc.contributor.author | Eronen-Rasimus, Eeva | |
dc.contributor.author | Delmont, Tom O. | |
dc.contributor.author | Marushchak, Maija E. | |
dc.contributor.author | Luoto, Miska | |
dc.contributor.author | Hultman, Jenni | |
dc.date.accessioned | 2022-08-16T08:49:28Z | |
dc.date.available | 2022-08-16T08:49:28Z | |
dc.date.issued | 2022 | |
dc.identifier.citation | Pessi, I. S., Viitamäki, S., Virkkala, A.-M., Eronen-Rasimus, E., Delmont, T. O., Marushchak, M. E., Luoto, M., & Hultman, J. (2022). In-depth characterization of denitrifier communities across different soil ecosystems in the tundra. <i>Environmental Microbiome</i>, <i>17</i>, Article 30. <a href="https://doi.org/10.1186/s40793-022-00424-2" target="_blank">https://doi.org/10.1186/s40793-022-00424-2</a> | |
dc.identifier.other | CONVID_150868742 | |
dc.identifier.uri | https://jyx.jyu.fi/handle/123456789/82582 | |
dc.description.abstract | Background In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N2O). However, the microorganisms involved in the cycling of N2O in this system remain largely uncharacterized. Since tundra soils are variable sources and sinks of N2O, we aimed at investigating differences in community structure across different soil ecosystems in the tundra. Results We analysed 1.4 Tb of metagenomic data from soils in northern Finland covering a range of ecosystems from dry upland soils to water-logged fens and obtained 796 manually binned and curated metagenome-assembled genomes (MAGs). We then searched for MAGs harbouring genes involved in denitrification, an important process driving N2O emissions. Communities of potential denitrifiers were dominated by microorganisms with truncated denitrification pathways (i.e., lacking one or more denitrification genes) and differed across soil ecosystems. Upland soils showed a strong N2O sink potential and were dominated by members of the Alphaproteobacteria such as Bradyrhizobium and Reyranella. Fens, which had in general net-zero N2O fluxes, had a high abundance of poorly characterized taxa affiliated with the Chloroflexota lineage Ellin6529 and the Acidobacteriota subdivision Gp23. Conclusions By coupling an in-depth characterization of microbial communities with in situ measurements of N2O fluxes, our results suggest that the observed spatial patterns of N2O fluxes in the tundra are related to differences in the composition of denitrifier communities. | en |
dc.format.mimetype | application/pdf | |
dc.language.iso | eng | |
dc.publisher | BioMed Central Ltd | |
dc.relation.ispartofseries | Environmental Microbiome | |
dc.rights | CC BY 4.0 | |
dc.subject.other | arctic | |
dc.subject.other | denitrification | |
dc.subject.other | genome-resolved metagenomics | |
dc.subject.other | nitrous oxide | |
dc.title | In-depth characterization of denitrifier communities across different soil ecosystems in the tundra | |
dc.type | article | |
dc.identifier.urn | URN:NBN:fi:jyu-202208164126 | |
dc.contributor.laitos | Bio- ja ympäristötieteiden laitos | fi |
dc.contributor.laitos | Department of Biological and Environmental Science | en |
dc.contributor.oppiaine | Ympäristötiede | fi |
dc.contributor.oppiaine | Environmental Science | en |
dc.type.uri | http://purl.org/eprint/type/JournalArticle | |
dc.type.coar | http://purl.org/coar/resource_type/c_2df8fbb1 | |
dc.description.reviewstatus | peerReviewed | |
dc.relation.issn | 2524-6372 | |
dc.relation.volume | 17 | |
dc.type.version | publishedVersion | |
dc.rights.copyright | © The Author(s) 2022. | |
dc.rights.accesslevel | openAccess | fi |
dc.relation.grantnumber | 317054 | |
dc.subject.yso | typen kierto | |
dc.subject.yso | denitrifikaatio | |
dc.subject.yso | kasvihuonekaasut | |
dc.subject.yso | tundra | |
dc.subject.yso | maaperä | |
dc.subject.yso | genomiikka | |
dc.subject.yso | dityppioksidi | |
dc.subject.yso | arktinen alue | |
dc.subject.yso | mikrobisto | |
dc.format.content | fulltext | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p39306 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p12487 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p4729 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p16902 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p1675 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p5146 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p15107 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p12434 | |
jyx.subject.uri | http://www.yso.fi/onto/yso/p27039 | |
dc.rights.url | https://creativecommons.org/licenses/by/4.0/ | |
dc.relation.doi | 10.1186/s40793-022-00424-2 | |
dc.relation.funder | Research Council of Finland | en |
dc.relation.funder | Suomen Akatemia | fi |
jyx.fundingprogram | Postdoctoral Researcher, AoF | en |
jyx.fundingprogram | Tutkijatohtori, SA | fi |
jyx.fundinginformation | This work was funded by the Academy of Finland (Grants 314114 and 335354) and the University of Helsinki. SV was funded by the Microbiology and Biotechnology Doctoral Programme (MBDP). AMV was funded by the Academy of Finland (Grant 286950), the Otto Malm Foundation, and the Gordon and Betty Moore Foundation (Grant 8414). MEM was supported by the Academy of Finland (Grants 314630 and 317054). Open access funded by Helsinki University Library. | |
dc.type.okm | A1 |