How to reach optimal estimates of confidence intervals in microscopic counting of phytoplankton?
Salonen, K., Salmi, P., & Keskitalo, J. (2021). How to reach optimal estimates of confidence intervals in microscopic counting of phytoplankton?. Journal of Plankton Research, 43(6), 846-852. https://doi.org/10.1093/plankt/fbab062
Published in
Journal of Plankton ResearchDate
2021Discipline
Computing, Information Technology and MathematicsResurssiviisausyhteisöLaskennallinen tiedeComputing, Information Technology and MathematicsSchool of Resource WisdomComputational ScienceCopyright
© The Author(s) 2021. Published by Oxford University Press
Present practices in the microscopic counting of phytoplankton to estimate the reliability of results rely on the assumption of a random distribution of taxa in sample preparations. In contrast to that and in agreement with the literature, we show that aggregated distribution is common and can lead to over-optimistic confidence intervals, if estimated according to the shortcut procedure of Lund et al. based on the number of counted cells. We found a good linear correlation between the distribution independent confidence intervals for medians and those for parametric statistics so that 95% confidence intervals can be approximated by using a correction factor of 1.4. Instead, the recommendation to estimate confidence intervals from the total number of counted cells according to Lund et al. should be categorically rejected. We further propose the adoption of real-time confidence intervals during microscopic counting as the criterion to define how long counting should be continued. Then each sample can be counted in its individual way to reach the necessary reliability independent of highly different samples. Such a dynamic counting strategy would be the most significant development in the quality control of phytoplankton counting since the early pioneers established the present counting practices in the late 1950s.
...
Publisher
Oxford University Press (OUP)ISSN Search the Publication Forum
0142-7873Publication in research information system
https://converis.jyu.fi/converis/portal/detail/Publication/103601502
Metadata
Show full item recordCollections
Additional information about funding
Lake Vesijärvi Foundation.License
Related items
Showing items with similar title or keywords.
-
Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities
Vuorio, Kristiina; Mäki, Anita; Salmi, Pauliina; Aalto, Sanni L.; Tiirola, Marja (Frontiers Media, 2020)The composition of phytoplankton community is the basis for environmental monitoring and assessment of the ecological status of aquatic ecosystems. Community composition studies of phytoplankton have been based on ... -
Comparison of epifluorescence microscopy and flow cytometry in counting freshwater picophytoplankton
Salmi, Pauliina; Mäki, Anita; Mikkonen, Anu; Pupponen, Veli-Mikko; Vuorio, Kristiina; Tiirola, Marja (Suomen ympäristökeskus, 2021)The smaller the phytoplankton, the greater effort is required to distinguish individual cells by optics-based methods. Flow cytometry is widely applied in marine picophytoplankton research, but in freshwater research its ... -
Effects of mechanical mixing on lake water quality, with special emphasis on under-ice phytoplankton
Salmi, Pauliina (University of Jyväskylä, 2015) -
Variation in ω-3 and ω-6 Polyunsaturated Fatty Acids Produced by Different Phytoplankton Taxa at Early and Late Growth Phase
Taipale, Sami; Peltomaa, Elina; Salmi, Pauliina (MDPI, 2020)Phytoplankton synthesizes essential ω-3 and ω-6 polyunsaturated fatty acids (PUFA) for consumers in the aquatic food webs. Only certain phytoplankton taxa can synthesize eicosapentaenoic (EPA; 20:5ω3) and docosahexaenoic ... -
A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins
Mantzouki, Evanthia; Campbell, James; van Loon, Emiel; Visser, Petra; Konstantinou, Iosif; Antoniou, Maria; Giuliani, Grégory; Machado-Vieira, Danielle; Oliveira, Alinne Gurjão de; Maronić, Dubravka Špoljarić; Stević, Filip; Pfeiffer, Tanja Žuna; Vucelić, Itana Bokan; Žutinić, Petar; Udovič, Marija Gligora; Plenković-Moraj, Anđelka; Tsiarta, Nikoletta; Bláha, Luděk; Geriš, Rodan; Fránková, Markéta; Christoffersen, Kirsten Seestern; Warming, Trine Perlt; Feldmann, Tõnu; Laas, Alo; Panksep, Kristel; Tuvikene, Lea; Kangro, Kersti; Häggqvist, Kerstin; Salmi, Pauliina; Arvola, Lauri; Fastner, Jutta; Straile, Dietmar; Rothhaupt, Karl-Otto; Fonvielle, Jeremy; Grossart, Hans-Peter; Avagianos, Christos; Kaloudis, Triantafyllos; Triantis, Theodoros; Zervou, Sevasti-Kiriaki; Hiskia, Anastasia; Gkelis, Spyros; Panou, Manthos; McCarthy, Valerie; Perello, Victor C.; Obertegger, Ulrike; Boscaini, Adriano; Flaim, Giovanna; Salmaso, Nico; Cerasino, Leonardo; Koreivienė, Judita; Karosienė, Jūratė; Kasperovičienė, Jūratė; Savadova, Ksenija; Vitonytė, Irma; Haande, Sigrid; Skjelbred, Birger; Grabowska, Magdalena; Karpowicz, Maciej; Chmura, Damian; Nawrocka, Lidia; Kobos, Justyna; Mazur-Marzec, Hanna; Alcaraz-Párraga, Pablo; Wilk-Woźniak, Elżbieta; Krztoń, Wojciech; Walusiak, Edward; Gagala, Ilona; Mankiewicz-Boczek, Joana; Toporowska, Magdalena; Pawlik-Skowronska, Barbara; Niedźwiecki, Michał; Pęczuła, Wojciech; Napiórkowska-Krzebietke, Agnieszka; Dunalska, Julita; Sieńska, Justyna; Szymański, Daniel; Kruk, Marek; Budzyńska, Agnieszka; Goldyn, Ryszard; Kozak, Anna; Rosińska, Joanna; Szeląg-Wasielewska, Elżbieta; Domek, Piotr; Jakubowska-Krepska, Natalia; Kwasizur, Kinga; Messyasz, Beata; Pełechata, Aleksandra; Pełechaty, Mariusz; Kokocinski, Mikolaj; Madrecka, Beata; Kostrzewska-Szlakowska, Iwona; Frąk, Magdalena; Bańkowska-Sobczak, Agnieszka; Wasilewicz, Michał; Ochocka, Agnieszka; Pasztaleniec, Agnieszka; Jasser, Iwona; Antão-Geraldes, Ana M.; Leira, Manel; Hernández, Armand; Vasconcelos, Vitor; Morais, João; Vale, Micaela; Raposeiro, Pedro M.; Gonçalves, Vítor; Aleksovski, Boris; Krstić, Svetislav; Nemova, Hana; Drastichova, Iveta; Chomova, Lucia; Remec-Rekar, Spela; Elersek, Tina; Delgado-Martín, Jordi; García, David; Cereijo, Jose Luís; Gomà, Joan; Trapote, Mari Carmen; Vegas-Vilarrúbia, Teresa; Obrador, Biel; García-Murcia, Ana; Real, Monserrat; Romans, Elvira; Noguero-Ribes, Jordi; Duque, David Parreño; Fernández-Morán, Elísabeth; Úbeda, Bárbara; Gálvez, José Ángel; Marcé, Rafael; Catalán, Núria; Pérez-Martínez, Carmen; Ramos-Rodríguez, Eloísa; Cillero-Castro, Carmen; Moreno-Ostos, Enrique; Blanco, José María; Rodríguez, Valeriano; Montes-Pérez, Jorge Juan; Palomino, Roberto L.; Rodríguez-Pérez, Estela; Carballeira, Rafael; Camacho, Antonio; Picazo, Antonio; Rochera, Carlos; Santamans, Anna C.; Ferriol, Carmen; Romo, Susana; Soria, Juan Miguel; Hansson, Lars-Anders; Urrutia-Cordero, Pablo; Özen, Arda; Bravo, Andrea G.; Buck, Moritz; Colom-Montero, William; Mustonen, Kristiina; Pierson, Don; Yang, Yang; Verspagen, Jolanda M. H.; Domis, Lisette N. de Senerpont; Seelen, Laura; Teurlincx, Sven; Verstijnen, Yvon; Lürling, Miquel; Maliaka, Valentini; Faassen, Elisabeth J.; Latour, Delphine; Carey, Cayelan C.; Paerl, Hans W.; Torokne, Andrea; Karan, Tünay; Demir, Nilsun; Beklioğlu, Meryem; Filiz, Nur; Levi, Eti E.; Iskin, Uğur; Bezirci, Gizem; Tavşanoğlu, Ülkü Nihan; Çelik, Kemal; Özhan, Koray; Karakaya, Nusret; et al.; Yilmaz, Mete; Maraşlıoğlu, Faruk; Fakioglu, Özden; Soylu, Elif Neyran; Yağcı, Meral Apaydın; Çınar, Şakir; Çapkın, Kadir; Yağcı, Abdulkadir; Cesur, Mehmet; Bilgin, Fuat; Bulut, Cafer; Uysal, Rahmi; Köker, Latife; Akçaalan, Reyhan; Albay, Meriç; Alp, Mehmet Tahir; Özkan, Korhan; Sevindik, Tuğba Ongun; Tunca, Hatice; Önem, Burçin; Richardson, Jessica; Edwards, Christine; Bergkemper, Victoria; O'Leary, Sarah; Beirne, Eilish; Cromie, Hannah; Ibelings, Bastiaan W. (Nature Publishing Group, 2018)Under ongoing climate change and increasing anthropogenic activity, which continuously challenge ecosystem resilience, an in-depth understanding of ecological processes is urgently needed. Lakes, as providers of numerous ...