Uncertainty quantification on a spatial Markov-chain model for the progression of skin cancer
Vermolen, F., & Pölönen, I. (2020). Uncertainty quantification on a spatial Markov-chain model for the progression of skin cancer. Journal of Mathematical Biology, 80(3), 545-573. https://doi.org/10.1007/s00285-019-01367-y
Published in
Journal of Mathematical BiologyDate
2020Copyright
© The Authors 2019
A spatial Markov-chain model is formulated for the progression of skin cancer. The model is based on the division of the computational domain into nodal points, that can be in a binary state: either in ‘cancer state’ or in ‘non-cancer state’. The model assigns probabilities for the non-reversible transition from ‘non-cancer’ state to the ‘cancer state’ that depend on the states of the neighbouring nodes. The likelihood of transition further depends on the life burden intensity of the UV-rays that the skin is exposed to. The probabilistic nature of the process and the uncertainty in the input data is assessed by the use of Monte Carlo simulations. A good fit between experiments on mice and our model has been obtained.
Publisher
SpringerISSN Search the Publication Forum
0303-6812Publication in research information system
https://converis.jyu.fi/converis/portal/detail/Publication/34023017
Metadata
Show full item recordCollections
License
Related items
Showing items with similar title or keywords.
-
Statistical analysis of life sequence data
Helske, Satu (University of Jyväskylä, 2016) -
On resampling schemes for particle filters with weakly informative observations
Chopin, Nicolas; Singh, Sumeetpal S.; Soto, Tomás; Vihola, Matti (Institute of Mathematical Statistics, 2022)We consider particle filters with weakly informative observations (or ‘potentials’) relative to the latent state dynamics. The particular focus of this work is on particle filters to approximate time-discretisations of ... -
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
Hamis, Sara; Somervuo, Panu; Ågren, J. Arvid; Tadele Dagim, Shiferaw; Kesseli, Juha; Scott, Jacob G.; Nykter, Matti; Gerlee, Philip; Finkelshtein, Dmitri; Ovaskainen, Otso (Springer Science and Business Media LLC, 2023)Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models ... -
Unbiased Inference for Discretely Observed Hidden Markov Model Diffusions
Chada, Neil K.; Franks, Jordan; Jasra, Ajay; Law, Kody J.; Vihola, Matti (Society for Industrial & Applied Mathematics (SIAM), 2021)We develop a Bayesian inference method for diffusions observed discretely and with noise, which is free of discretization bias. Unlike existing unbiased inference methods, our method does not rely on exact simulation ... -
Importance sampling correction versus standard averages of reversible MCMCs in terms of the asymptotic variance
Franks, Jordan; Vihola, Matti (Elsevier, 2020)We establish an ordering criterion for the asymptotic variances of two consistent Markov chain Monte Carlo (MCMC) estimators: an importance sampling (IS) estimator, based on an approximate reversible chain and subsequent ...