Näytä suppeat kuvailutiedot

dc.contributor.authorLavrinienko, Anton
dc.contributor.authorJernfors, Toni
dc.contributor.authorKoskimäki, Janne J.
dc.contributor.authorPirttilä, Anna Maria
dc.contributor.authorWatts, Phillip C.
dc.date.accessioned2020-07-02T08:27:09Z
dc.date.available2020-07-02T08:27:09Z
dc.date.issued2021
dc.identifier.citationLavrinienko, A., Jernfors, T., Koskimäki, J. J., Pirttilä, A. M., & Watts, P. C. (2021). Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?. <i>Trends in microbiology</i>, <i>29</i>(1), 19-27. <a href="https://doi.org/10.1016/j.tim.2020.05.019" target="_blank">https://doi.org/10.1016/j.tim.2020.05.019</a>
dc.identifier.otherCONVID_36252838
dc.identifier.urihttps://jyx.jyu.fi/handle/123456789/71026
dc.description.abstractAmplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to profile microbial communities. However, the rDNA is dynamic and can exhibit substantial interspecific and intraspecific variation in copy number in prokaryotes and, especially, in microbial eukaryotes. As change in rDNA copy number is a common response to environmental change, rDNA copy number is not necessarily a property of a species. Variation in rDNA copy number, especially the capacity for large intraspecific changes driven by external cues, complicates analyses of rDNA amplicon sequence data. We highlight the need to (i) interpret amplicon sequence data in light of possible interspecific and intraspecific variation, and (ii) examine the potential plasticity in rDNA copy number as an important ecological factor to better understand how microbial communities are structured in heterogeneous environments.en
dc.format.mimetypeapplication/pdf
dc.languageeng
dc.language.isoeng
dc.publisherElsevier
dc.relation.ispartofseriesTrends in microbiology
dc.rightsCC BY-NC-ND 4.0
dc.subject.otherrRNA
dc.subject.othercopy number
dc.subject.otheramplicon sequencing
dc.subject.othercommunity dynamics
dc.titleDoes Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?
dc.typearticle
dc.identifier.urnURN:NBN:fi:jyu-202007025207
dc.contributor.laitosBio- ja ympäristötieteiden laitosfi
dc.contributor.laitosDepartment of Biological and Environmental Scienceen
dc.contributor.oppiaineEkologia ja evoluutiobiologiafi
dc.contributor.oppiaineEcology and Evolutionary Biologyen
dc.type.urihttp://purl.org/eprint/type/JournalArticle
dc.type.coarhttp://purl.org/coar/resource_type/c_2df8fbb1
dc.description.reviewstatuspeerReviewed
dc.format.pagerange19-27
dc.relation.issn0966-842X
dc.relation.numberinseries1
dc.relation.volume29
dc.type.versionpublishedVersion
dc.rights.copyright© 2020 The Authors. Published by Elsevier Ltd
dc.rights.accesslevelopenAccessfi
dc.relation.grantnumber329334
dc.subject.ysomikrobit
dc.subject.ysoDNA-analyysi
dc.subject.ysoRNA
dc.subject.ysoribosomit
dc.subject.ysoDNA
dc.subject.ysomikrobisto
dc.format.contentfulltext
jyx.subject.urihttp://www.yso.fi/onto/yso/p5424
jyx.subject.urihttp://www.yso.fi/onto/yso/p25695
jyx.subject.urihttp://www.yso.fi/onto/yso/p7689
jyx.subject.urihttp://www.yso.fi/onto/yso/p22179
jyx.subject.urihttp://www.yso.fi/onto/yso/p7690
jyx.subject.urihttp://www.yso.fi/onto/yso/p27039
dc.rights.urlhttps://creativecommons.org/licenses/by-nc-nd/4.0/
dc.relation.doi10.1016/j.tim.2020.05.019
dc.relation.funderResearch Council of Finlanden
dc.relation.funderSuomen Akatemiafi
jyx.fundingprogramJoint International Project, AoFen
jyx.fundingprogramKV-yhteishanke, SAfi
jyx.fundinginformationThis work was supported by the Academy of Finland (toP.C.W. projects 287153 and 329334; to A.M.P. and J.J.K. project 308766), University of Oulu Graduate School (A.L.),and Finnish Cultural Foundation (T.J.).
dc.type.okmA1


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