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dc.contributor.authorChen, Liang
dc.contributor.authorHeikkinen, Liisa
dc.contributor.authorWang, ChangLiang
dc.contributor.authorYang, Yang
dc.contributor.authorKnott, Emily
dc.contributor.authorWong, Garry
dc.date.accessioned2018-06-13T09:53:50Z
dc.date.available2018-06-13T09:53:50Z
dc.date.issued2018fi
dc.identifier.citationChen, L., Heikkinen, L., Wang, C., Yang, Y., Knott, E., & Wong, G. (2018). miRToolsGallery : a tag-based and rankable microRNA bioinformatics resources database portal. <em>Database : The journal of Biological Databases and Curation</em>, 2018, bay004. <a href="https://doi.org/10.1093/database/bay004">doi:10.1093/database/bay004</a>fi
dc.identifier.otherTUTKAID_76929
dc.identifier.urihttps://jyx.jyu.fi/handle/123456789/58526
dc.description.abstractHundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and rankable. The ranking feature is vital to quickly identify and prioritize the more useful from the obscure tools. Tools are ranked via different criteria including the PageRank algorithm, date of publication, number of citations, average of votes and number of publications. miRToolsGallery provides links and data for the comprehensive collection of currently available miRNA tools with a ranking function which can be adjusted using different criteria according to specific requirements.fi
dc.format.mimetypeapplication/pdf
dc.language.isoeng
dc.publisherOxford University Press
dc.relation.ispartofseriesDatabase : The journal of Biological Databases and Curation
dc.rightsCC BY 4.0
dc.subject.otherbioinformatiikkafi
dc.subject.otherbioinformaticsfi
dc.subject.othertoolsfi
dc.subject.othermiRToolsGalleryfi
dc.titlemiRToolsGallery : a tag-based and rankable microRNA bioinformatics resources database portalfi
dc.typearticle
dc.identifier.urnURN:NBN:fi:jyu-201806043003
dc.contributor.laitosBio- ja ympäristötieteiden laitosfi
dc.contributor.laitosThe Department of Biological and Environmental Scienceen
dc.contributor.oppiaineEkologia ja evoluutiobiologia
dc.type.urihttp://purl.org/eprint/type/JournalArticle
dc.date.updated2018-06-04T12:15:21Z
dc.description.reviewstatuspeerReviewed
dc.relation.issn1758-0463
dc.relation.numberinseries0
dc.relation.volume2018
dc.type.versionPublisher's PDF
dc.rights.copyright© The Authors 2018. Published by Oxford University Press
dc.rights.accesslevelopenAccessfi
dc.format.contentfulltext
dc.rights.urlhttps://creativecommons.org/licenses/by/4.0/
dc.relation.doi10.1093/database/bay004


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