Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen
Almeida, Gabriel MF; Hoikkala, Ville; Ravantti, Janne; Rantanen, Noora; Sundberg, Lotta-Riina (2022). Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen. V. 24.5.2022. 10.17011/jyx/dataset/81288
Sundberg, Lotta-Riina and University of Jyväskylä
This dataset contains raw data points of (1) phage-bacterium co-evolution experiment (flavobacterium columnare colony counts, phage counts, bacterial growth characteristics and number of CRISPR-Cas spacers) and (2) from competition experiment between Flavobacterium columnare and Aeromonas sp. For detailed method description, see the attached Documentation file.
Dataset in research information system
MetadataShow full item record
- Tutkimusdata 
Related funder(s)Suomen Akatemia; Academy of Finland
Funding program(s)Academy Project, AoF; Akatemiahanke, SA
Except where otherwise noted, this item's license is described as Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
Showing items with similar title or keywords.
Hoikkala, Ville (2020)Bacteria are in constant interaction with their viruses, bacteriophages (phages). To prevent or abort phage infections, a variety of defence mechanisms have evolved. CRISPR-Cas, the only known adaptive bacterial immune ...
Hoikkala, Ville; Ravantti, Janne; Díez-Villaseñor, César; Tiirola, Marja; Conrad, Rachel A.; McBride, Mark J.; Moineau, Sylvain; Sundberg, Lotta-Riina (American Society for Microbiology, 2021)CRISPR-Cas immune systems adapt to new threats by acquiring new spacers from invading nucleic acids such as phage genomes. However, some CRISPR-Cas loci lack genes necessary for spacer acquisition despite variation in ...
Hoikkala, Ville; De Freitas Almeida, Gabriel; Laanto, Elina; Sundberg, Lotta-Riina (Royal Society, 2019)So far, studies on the bacterial immune system CRISPR-Cas and its ecological and evolutionary effects have been largely limited to laboratory conditions. While providing crucial information on the constituents of CRISPR-Cas, ...
Exploring evolutionary responses to increasing temperature in an environmental opportunistic pathogen Ashrafi, Roghaieh (University of Jyväskylä, 2017)
Almeida, Gabriel M. F.; Laanto, Elina; Ashrafi, Roghaleh; Sundberg, Lotta-Riina (American Society for Microbiology, 2019)Metazoans were proposed to host bacteriophages on their mucosal surfaces in a symbiotic relationship, where phages provide an external immunity against bacterial infections and the metazoans provide phages a medium for ...