Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen
Almeida, Gabriel MF; Hoikkala, Ville; Ravantti, Janne; Rantanen, Noora; Sundberg, Lotta-Riina (2022). Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen. V. 24.5.2022. 10.17011/jyx/dataset/81288
Sundberg, Lotta-Riina and University of Jyväskylä
This dataset contains raw data points of (1) phage-bacterium co-evolution experiment (flavobacterium columnare colony counts, phage counts, bacterial growth characteristics and number of CRISPR-Cas spacers) and (2) from competition experiment between Flavobacterium columnare and Aeromonas sp. For detailed method description, see the attached Documentation file.
Dataset in research information system
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- Tutkimusdata 
Related funder(s)Suomen Akatemia; Academy of Finland
Funding program(s)Academy Project, AoF; Akatemiahanke, SA
Except where otherwise noted, this item's license is described as Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
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Hoikkala, Ville (2020)Bacteria are in constant interaction with their viruses, bacteriophages (phages). To prevent or abort phage infections, a variety of defence mechanisms have evolved. CRISPR-Cas, the only known adaptive bacterial immune ...
Hoikkala, Ville; De Freitas Almeida, Gabriel; Laanto, Elina; Sundberg, Lotta-Riina (Royal Society, 2019)So far, studies on the bacterial immune system CRISPR-Cas and its ecological and evolutionary effects have been largely limited to laboratory conditions. While providing crucial information on the constituents of CRISPR-Cas, ...
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Almeida, Gabriel M. F.; Laanto, Elina; Ashrafi, Roghaleh; Sundberg, Lotta-Riina (American Society for Microbiology, 2019)Metazoans were proposed to host bacteriophages on their mucosal surfaces in a symbiotic relationship, where phages provide an external immunity against bacterial infections and the metazoans provide phages a medium for ...