Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen
Almeida, Gabriel MF; Hoikkala, Ville; Ravantti, Janne; Rantanen, Noora; Sundberg, Lotta-Riina (2022). Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen. V. 24.5.2022. 10.17011/jyx/dataset/81288
Tekijät
Päivämäärä
2022-05-27Tekijänoikeudet
Sundberg, Lotta-Riina and University of Jyväskylä
This dataset contains raw data points of (1) phage-bacterium co-evolution experiment (flavobacterium columnare colony counts, phage counts, bacterial growth characteristics and number of CRISPR-Cas spacers) and (2) from competition experiment between Flavobacterium columnare and Aeromonas sp. For detailed method description, see the attached Documentation file.
Asiasanat
Aineisto tutkimustietojärjestelmässä
https://converis.jyu.fi/converis/portal/detail/ResearchDataset/144339760
Metadata
Näytä kaikki kuvailutiedotKokoelmat
- Tutkimusdata [284]
Rahoittaja(t)
Suomen Akatemia; Academy of FinlandRahoitusohjelmat(t)
Academy Project, AoF; Akatemiahanke, SALisenssi
Ellei muuten mainita, aineiston lisenssi on Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
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Mucin induces CRISPR-Cas defense in an opportunistic pathogen
de Freitas Almeida, Gabriel Magno; Hoikkala, Ville; Ravantti, Janne; Rantanen, Noora; Sundberg, Lotta-Riina (Nature Publishing Group, 2022)Parasitism by bacteriophages has led to the evolution of a variety of defense mechanisms in their host bacteria. However, it is unclear what factors lead to specific defenses being deployed upon phage infection. To explore ... -
Memoirs of a fish pathogen: how CRISPR-Cas captures phage encounters in Flavobacterium columnare
Hoikkala, Ville (Jyväskylän yliopisto, 2020)Bacteria are in constant interaction with their viruses, bacteriophages (phages). To prevent or abort phage infections, a variety of defence mechanisms have evolved. CRISPR-Cas, the only known adaptive bacterial immune ... -
Aquaculture as a source of empirical evidence for coevolution between CRISPR-Cas and phage
Hoikkala, Ville; De Freitas Almeida, Gabriel; Laanto, Elina; Sundberg, Lotta-Riina (Royal Society, 2019)So far, studies on the bacterial immune system CRISPR-Cas and its ecological and evolutionary effects have been largely limited to laboratory conditions. While providing crucial information on the constituents of CRISPR-Cas, ... -
Cooperation between Different CRISPR-Cas Types Enables Adaptation in an RNA-Targeting System
Hoikkala, Ville; Ravantti, Janne; Díez-Villaseñor, César; Tiirola, Marja; Conrad, Rachel A.; McBride, Mark J.; Moineau, Sylvain; Sundberg, Lotta-Riina (American Society for Microbiology, 2021)CRISPR-Cas immune systems adapt to new threats by acquiring new spacers from invading nucleic acids such as phage genomes. However, some CRISPR-Cas loci lack genes necessary for spacer acquisition despite variation in ... -
Exploring evolutionary responses to increasing temperature in an environmental opportunistic pathogen
Ashrafi, Roghaieh (University of Jyväskylä, 2017)
Ellei toisin mainittu, julkisesti saatavilla olevia JYX-metatietoja (poislukien tiivistelmät) saa vapaasti uudelleenkäyttää CC0-lisenssillä.