Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk

Abstract
Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 580,869 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.
Main Authors
Shrine, Nick Izquierdo, Abril G. Chen, Jing Packer, Richard Hall, Robert J. Guyatt, Anna L. Batini, Chiara Thompson, Rebecca J. Pavuluri, Chandan Malik, Vidhi Hobbs, Brian D. Moll, Matthew Kim, Wonji Tal-Singer, Ruth Bakke, Per Fawcett, Katherine A. John, Catherine Coley, Kayesha Piga, Noemi Nicole Pozarickij, Alfred Lin, Kuang Millwood, Iona Y. Chen, Zhengming Li, Liming Wijnant, Sara R. A. Lahousse, Lies Brusselle, Guy Uitterlinden, Andre G. Manichaikul, Ani Oelsner, Elizabeth C. Rich, Stephen S. Barr, R. Graham Kerr, Shona M. Vitart, Veronique Brown, Michael R. Wielscher, Matthias Imboden, Medea Jeong, Ayoung Bartz, Traci M. Gharib, Sina A. Flexeder, Claudia Karrasch, Stefan Gieger, Christian Peters, Annette Stubbe, Beate Hu, Xiaowei Ortega, Victor E. Meyers, Deborah A. Bleecker, Eugene R. Gabriel, Stacey B. Gupta, Namrata Smith, Albert Vernon Luan, Jian’an Zhao, Jing-Hua Hansen, Ailin F. Langhammer, Arnulf Willer, Cristen Bhatta, Laxmi Porteous, David Smith, Blair H. Campbell, Archie Sofer, Tamar Lee, Jiwon Daviglus, Martha L. Yu, Bing Lim, Elise Xu, Hanfei O’Connor, George T. Thareja, Gaurav Albagha, Omar M. E. Ismail, Said I. Al-Muftah, Wadha Badji, Radja Mbarek, Hamdi Darwish, Dima Fadl, Tasnim Yasin, Heba Ennaifar, Maryem Abdellatif, Rania Alkuwari, Fatima Alvi, Muhammad Al-Sarraj, Yasser Saad, Chadi Althani, Asmaa Fethnou, Eleni Qafoud, Fatima Alkhayat, Eiman Afifi, Nahla Tomei, Sara Liu, Wei Lorenz, Stephan Syed, Najeeb Almabrazi, Hakeem Vempalli, Fazulur Rehaman Temanni, Ramzi Saqri Tariq, Abu Khatib, Mohammedhusen Hamza, Mehshad Zaid Tariq, Abu El Khouly, Ahmed Pathare, Tushar Poolat, Shafeeq Al-Ali, Rashid Al-Khodor, Souhaila Alshafai, Mashael Badii, Ramin Chouchane, Lotfi Estivill, Xavier Fakhro, Khalid Mokrab, Younes Puthen, Jithesh V. Tatari, Zohreh Suhre, Karsten Granell, Raquel Faquih, Tariq O. Hiemstra, Pieter S. Slats, Annelies M. Mullin, Benjamin H. Hui, Jennie James, Alan Beilby, John Patasova, Karina Hysi, Pirro Koskela, Jukka T. Wyss, Annah B. Jin, Jianping Sikdar, Sinjini Lee, Mikyeong May-Wilson, Sebastian Pirastu, Nicola Kentistou, Katherine A. Joshi, Peter K. Timmers, Paul R. H. J. Williams, Alexander T. Free, Robert C. Wang, Xueyang Morrison, John L. Gilliland, Frank D. Chen, Zhanghua Wang, Carol A. Foong, Rachel E. Harris, Sarah E. Taylor, Adele Redmond, Paul Cook, James P. Mahajan, Anubha Lind, Lars Palviainen, Teemu Lehtimäki, Terho Raitakari, Olli T. Kaprio, Jaakko Rantanen, Taina Pietiläinen, Kirsi H. Cox, Simon R. Pennell, Craig E. Hall, Graham L. Gauderman, W. James Brightling, Chris Wilson, James F. Vasankari, Tuula Laitinen, Tarja Salomaa, Veikko Mook-Kanamori, Dennis O. Timpson, Nicholas J. Zeggini, Eleftheria Dupuis, Josée Hayward, Caroline Brumpton, Ben Langenberg, Claudia Weiss, Stefan Homuth, Georg Schmidt, Carsten Oliver Probst-Hensch, Nicole Jarvelin, Marjo-Riitta Morrison, Alanna C. Polasek, Ozren Rudan, Igor Lee, Joo-Hyeon Sayers, Ian Rawlins, Emma L. Dudbridge, Frank Silverman, Edwin K. Strachan, David P. Walters, Robin G. Morris, Andrew P. London, Stephanie J. Cho, Michael H. Wain, Louise V. Hall, Ian P. Tobin, Martin D.
Format
Articles Research article
Published
2023
Series
Subjects
Publication in research information system
Publisher
Nature Publishing Group
The permanent address of the publication
https://urn.fi/URN:NBN:fi:jyu-202303222227Käytä tätä linkitykseen.
Review status
Peer reviewed
ISSN
1061-4036
DOI
https://doi.org/10.1038/s41588-023-01314-0
Language
English
Published in
Nature Genetics
Citation
  • Shrine, N., Izquierdo, A. G., Chen, J., Packer, R., Hall, R. J., Guyatt, A. L., Batini, C., Thompson, R. J., Pavuluri, C., Malik, V., Hobbs, B. D., Moll, M., Kim, W., Tal-Singer, R., Bakke, P., Fawcett, K. A., John, C., Coley, K., Piga, N. N., . . . Tobin, M. D. (2023). Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk. Nature Genetics, 55, 410-422. https://doi.org/10.1038/s41588-023-01314-0
License
CC BY 4.0Open Access
Copyright© Authors 2023

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