Bayesian Modeling of Sequential Discoveries
Abstract
We aim at modelling the appearance of distinct tags in a sequence of labelled objects. Common examples of this type of data include words in a corpus or distinct species in a sample. These sequential discoveries are often summarised via accumulation curves, which count the number of distinct entities observed in an increasingly large set of objects. We propose a novel Bayesian method for species sampling modelling by directly specifying the probability of a new discovery, therefore allowing for flexible specifications. The asymptotic behavior and finite sample properties of such an approach are extensively studied. Interestingly, our enlarged class of sequential processes includes highly tractable special cases. We present a subclass of models characterized by appealing theoretical and computational properties, including one that shares the same discovery probability with the Dirichlet process. Moreover, due to strong connections with logistic regression models, the latter subclass can naturally account for covariates. We finally test our proposal on both synthetic and real data, with special emphasis on a large fungal biodiversity study in Finland.
Main Authors
Format
Articles
Research article
Published
2022
Series
Subjects
Publication in research information system
Publisher
Taylor & Francis
The permanent address of the publication
https://urn.fi/URN:NBN:fi:jyu-202211285379Käytä tätä linkitykseen.
Review status
Peer reviewed
ISSN
0162-1459
DOI
https://doi.org/10.1080/01621459.2022.2060835
Language
English
Published in
Journal of the American Statistical Association
Citation
- Zito, A., Rigon, T., Ovaskainen, O., & Dunson, D. B. (2022). Bayesian Modeling of Sequential Discoveries. Journal of the American Statistical Association, Early online. https://doi.org/10.1080/01621459.2022.2060835
Funder(s)
European Commission
Funding program(s)
ERC European Research Council, H2020
ERC European Research Council, H2020
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Additional information about funding
This project has received funding from the European Research Council under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 856506).
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