Association analyses identify 31 new risk loci for colorectal cancer susceptibility

Abstract
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
Main Authors
Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora consortium, The PRACTICAL Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G.
Format
Articles Research article
Published
2019
Series
Subjects
Publication in research information system
Publisher
Nature Publishing Group
The permanent address of the publication
https://urn.fi/URN:NBN:fi:jyu-201905152623Käytä tätä linkitykseen.
Review status
Peer reviewed
ISSN
2041-1723
DOI
https://doi.org/10.1038/s41467-019-09775-w
Language
English
Published in
Nature Communications
Citation
  • Law, P. J., Timofeeva, M., Fernandez-Rozadilla, C., Broderick, P., Studd, J., Fernandez-Tajes, J., Farrington, S., Svinti, V., Palles, C., Orlando, G., Sud, A., Holroyd, A., Penegar, S., Theodoratou, E., Vaughan-Shaw, P., Campbell, H., Zgaga, L., Hayward, C., Campbell, A., . . . Dunlop, M. G. (2019). Association analyses identify 31 new risk loci for colorectal cancer susceptibility. Nature Communications, 10, Article 2154. https://doi.org/10.1038/s41467-019-09775-w
License
CC BY 4.0Open Access
Copyright© The Authors, 2019.

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