The effect of automated taxa identification errors on biological indices

Abstract
In benthic macroinvertebrate biomonitoring systems, the target is to determine the status of ecosystems based on several biological indices. To increase cost-efficiency, computer-based taxa identification for image data has recently been developed. Taxa identification errors can, however, have strong effects on the indices and thus on the determination of the ecological status. In order to shift the biomonitoring process towards automated expert systems, we need a clear understanding on the bias caused by automation. In this paper, we examine eleven classification methods in the case of macroinvertebrate image data and show how their classification errors propagate into different biological indices. We evaluate 14 richness, diversity, dominance and similarity indices commonly used in biomonitoring. Besides the error rate of the classification method, we discuss the potential effect of different types of identification errors. Finally, we provide recommendations on indices that are least affected by the automatic identification errors and could be used in automated biomonitoring.
Main Authors
Format
Articles Research article
Published
2017
Series
Subjects
Publication in research information system
Publisher
Pergamon
The permanent address of the publication
https://urn.fi/URN:NBN:fi:jyu-201701021008Käytä tätä linkitykseen.
Review status
Peer reviewed
ISSN
0957-4174
DOI
https://doi.org/10.1016/j.eswa.2016.12.015
Language
English
Published in
Expert Systems with Applications
Citation
  • Ärje, J., Kärkkäinen, S., Meissner, K., Iosifidis, A., Ince, T., Gabbouj, M., & Kiranyaz, S. (2017). The effect of automated taxa identification errors on biological indices. Expert Systems with Applications, 72, 108-120. https://doi.org/10.1016/j.eswa.2016.12.015
License
Open Access
Funder(s)
Research Council of Finland
Funding program(s)
Akatemiahanke, SA
Academy Project, AoF
Research Council of Finland
Additional information about funding
We thank the Academy of Finland (projects 288584 (Kiranyaz), 295854 (Iosidis), 289364 (Gabbouj), 289076 (Ärje, Kärkkäinen) and 289104 (Meissner)) and the Ellen and Artturi Nyyssönen foundation for the grant of Ärje. The authors would like to thank Marko Vikstedt for the preparation of the monitoring data and Tuomas Turpeinen for the image data. We kindly thank Antti Penttinen for fruitful discussions and support.
Copyright© 2016 Elsevier Ltd. This is a final draft version of an article whose final and definitive form has been published by Elsevier. Published in this repository with the kind permission of the publisher.

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