The effect of automated taxa identification errors on biological indices
Ärje, J., Kärkkäinen, S., Meissner, K., Iosifidis, A., Ince, T., Gabbouj, M., & Kiranyaz, S. (2017). The effect of automated taxa identification errors on biological indices. Expert Systems with Applications, 72, 108-120. https://doi.org/10.1016/j.eswa.2016.12.015
Julkaistu sarjassa
Expert Systems with ApplicationsTekijät
Päivämäärä
2017Tekijänoikeudet
© 2016 Elsevier Ltd. This is a final draft version of an article whose final and definitive form has been published by Elsevier. Published in this repository with the kind permission of the publisher.
In benthic macroinvertebrate biomonitoring systems, the target is to determine the status of ecosystems based on several biological indices. To increase cost-efficiency, computer-based taxa identification for image data has recently been developed. Taxa identification errors can, however, have strong effects on the indices and thus on the determination of the ecological status. In order to shift the biomonitoring process towards automated expert systems, we need a clear understanding on the bias caused by automation. In this paper, we examine eleven classification methods in the case of macroinvertebrate image data and show how their classification errors propagate into different biological indices. We evaluate 14 richness, diversity, dominance and similarity indices commonly used in biomonitoring. Besides the error rate of the classification method, we discuss the potential effect of different types of identification errors. Finally, we provide recommendations on indices that are least affected by the automatic identification errors and could be used in automated biomonitoring.
...
Julkaisija
PergamonISSN Hae Julkaisufoorumista
0957-4174Asiasanat
Julkaisu tutkimustietojärjestelmässä
https://converis.jyu.fi/converis/portal/detail/Publication/26388382
Metadata
Näytä kaikki kuvailutiedotKokoelmat
Rahoittaja(t)
Suomen AkatemiaRahoitusohjelmat(t)
Akatemiahanke, SALisätietoja rahoituksesta
We thank the Academy of Finland (projects 288584 (Kiranyaz), 295854 (Iosidis), 289364 (Gabbouj), 289076 (Ärje, Kärkkäinen) and 289104 (Meissner)) and the Ellen and Artturi Nyyssönen foundation for the grant of Ärje. The authors would like to thank Marko Vikstedt for the preparation of the monitoring data and Tuomas Turpeinen for the image data. We kindly thank Antti Penttinen for fruitful discussions and support. ...Samankaltainen aineisto
Näytetään aineistoja, joilla on samankaltainen nimeke tai asiasanat.
-
Improving statistical classification methods and ecological status assessment for river macroinvertebrates
Ärje, Johanna (University of Jyväskylä, 2016)Aquatic ecosystems are facing a growing number of human-induced stressors and the need to implement more biomonitoring to assess the ecological status of water bodies is eminent. This dissertation aims at providing tools ... -
Benchmark Database for Fine-Grained Image Classification of Benthic Macroinvertebrates
Raitoharju, Jenni; Riabchenko, Ekaterina; Ahmad, Iftikhar; Iosifidis, Alexandros; Gabbouj, Moncef; Kiranyaz, Serkan; Tirronen, Ville; Ärje, Johanna; Kärkkäinen, Salme; Meissner, Kristian (Elsevier BV, 2018)Managing the water quality of freshwaters is a crucial task worldwide. One of the most used methods to biomonitor water quality is to sample benthic macroinvertebrate communities, in particular to examine the presence and ... -
Human experts vs. machines in taxa recognition
Ärje, Johanna; Raitoharju, Jenni; Iosifidis, Alexandros; Tirronen, Ville; Meissner, Kristian; Gabbouj, Moncef; Kiranyaz, Serkan; Kärkkäinen, Salme (Elsevier, 2020)The step of expert taxa recognition currently slows down the response time of many bioassessments. Shifting to quicker and cheaper state-of-the-art machine learning approaches is still met with expert scepticism towards ... -
Field-Grown and In Vitro Propagated Round-Leaved Sundew (Drosera rotundifolia L.) Show Differences in Metabolic Profiles and Biological Activities
Tienaho, Jenni; Reshamwala, Dhanik; Karonen, Maarit; Silvan, Niko; Korpela, Leila; Marjomäki, Varpu; Sarjala, Tytti (MDPI AG, 2021)Drosera rotundifolia L. is a carnivorous plant used in traditional medicine for its therapeutic properties. Because of its small size, its collection in nature is laborious and different cultivation methods have been studied ... -
Catastrophic effects of sand mining on macroinvertebrates in a large shallow lake with implications for management
Zou, Wei; Tolonen, Kimmo; Zhu, Guangwei; Qin, Boqiang; Zhang, Yunling; Cao, Zhigang; Kai, Peng; Cai, Yongjiu; Gong, Zhijun (Elsevier, 2019)Sand mining is a human activity that is increasing in inland waters and has profound effects on entire aquatic ecosystems. However, current knowledge of the effects of sand mining on freshwater lake ecosystems remains ...
Ellei toisin mainittu, julkisesti saatavilla olevia JYX-metatietoja (poislukien tiivistelmät) saa vapaasti uudelleenkäyttää CC0-lisenssillä.