Computational modeling of protein diffusion in the cell nucleus using the lattice-Boltzmann method
The number of fluorescence applications and methods of analysis is growing in the biological and related sciences. The aim of this work was to accurately determine the diffusion coefficient in nucleus, diffusion in the cytoplasm and nucleo-cytoplasmic translocation should be considered as well. Fluorescence recovery after photobleaching (FRAP) experiments were used in order to study protein diffusion. A numerical model for FRAP was used to determine the diffusion properties of proteins. The present method removed the difficulties of the conventional analysis, could produce, interesting results for protein diffusion in the cell.
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Aaltosalmi, Urpo (University of Jyväskylä, 2005)
Riikilä, Timo (2012)In this thesis the basic properties of the lattice- Boltzmann method (LBM) are introduced. Also, a particle model used in combination with LBM is presented, and the combined model is then applied to ink propagation in ...
Hyväluoma, Jari (University of Jyväskylä, 2006)
Mattila, Keijo; Hegele, Luiz A.; Philippi, Paulo C. (American Physical Society, 2015)The lattice-Boltzmann (LB) method is commonly used for the simulation of fluid flows at the hydrodynamic level of description. Due to its kinetic theory origins, the standard LB schemes carry more degrees of freedom than ...
Mattila, Keijo (University of Jyväskylä, 2010)